Results for "Format"
Bio-Scripts
Install Parrot Virtual Machine !
...native byteorder for wordsize.....little-endian. auto::va_ptr - Test the type of va_ptr........................register. auto::format - What formats should be used for sprintf.....1538 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2126 days ago
- ...nsrate OPTIONS: --assembly= Assembly file(s) in FASTA format, comma-separated --left= Left reads file(s) in FASTQ format, comma-separated --right=...
2124 days ago
Installing Porechop on Ubuntu !
...) porechop -h usage: porechop -i INPUT [-o OUTPUT] [--format {auto,fasta,fastq,fasta.gz,fa...set, trimmed reads will be printed to stdout) --format {auto,fasta,fastq,fasta.gz,fa...2107 days ago
- ...b/bamtools-2.3.0/src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o [ 53%] Buildin...b/bamtools-2.3.0/src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o [ 54%] Buildi...
2099 days ago
- ...Prints read alignments in samtools pileup format PileupSpark...ool) Prints read alignments in samtools pileup format --------------------------...that manipulate read data in SAM, BAM or CRAM format AddCommentsToBam (Picard...
2076 days ago
Perl script to break the contigs by 'N'
#!/usr/bin/perl -w use Bio::SeqIO; use strict; my $fasta = Bio::SeqIO->new( -file => "$ARGV[0].parts.fasta",-format=>'fasta'); open(SCAFF,">$ARGV[0].parts.scaff"); while ( my...2063 days ago
- library(vcfR) # Input the files. vcf
2061 days ago
Perl script to run in parellel !
...hift; my (%sequence_data); my $file_content = new Bio::SeqIO(-format => 'fasta',-file => "$file"); my $out_content = Bio::SeqIO->newFh(-format => 'fasta', ,-file => ">genom...1687 days ago
Samtools commands for bioinformatician !
...index sorted files samtools index sal_sej_sorted.bam.bam ### identifying genome variants (mpileup command) # -g : output is bcf (binary call format) file # -f : use reference g...1604 days ago
