Results for "Fragment"
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PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, i...2964 days ago
REAPR: a universal tool for genome assembly evaluation
...The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size dist...2964 days ago
- ...and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, i...
2707 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al.&nbs...rRNA gene information is not available. For example, a partial genomic fragment obtained from a metagenome ca...
2571 days ago
HTTDB - Horizontally transferred transposable elements database
...atabase to include Horizontal-Virus Transfer also known as endogenization events which is characterized by the stable integration a viral genomic fragment into the host genome. https:...2307 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast nu...2168 days ago
SimLoRD: A read simulator for third generation sequencing reads
...Q file (typical for RNA), sampling from a a text file with integers (RNA), or using a fixed length Quality values and number of passes depend on fragment length. Provided subread err...2096 days ago
- ...wnstream of the Sailfish or Salmon tools for rapid transcript-level quantification. Specifically, RapClust relies on the fragment equivalence classes comp...
2053 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...version, normalization of molecules, generation of tautomers, molecule fragmentation, calculation of various...orting substructure and similarity searches. Our products support also fragment-based virtual screening, bioa...1945 days ago
- ClipCrop for detecting SVs with single-base resolution using soft-clipping information. A soft-clipped sequence is an unmatched fragment in a partially mapped read. To assess the perfo...
1945 days ago
