Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory a...embly & comparative genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The gra...2363 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2362 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...ters, particularly the gap extension score. As an accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved functional regulatory elements.2356 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzin..., and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive vis...2354 days ago
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NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific featur...oSim is read characterization, which provides a comprehensive alignment-based analysis and generates a set of read p...2344 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or ChIA-PET...2342 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa explo...it does not require either prior knowledge on the microrganisms dataset under analysis (e.g. their phylogenetic rela...2286 days ago
PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to au...2335 days ago