Results for "Functional annotation"
Top-level pages
Bash Script source: https://gist.github.com/santhilalsubhas...0a2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation table format. It generated tw...39f0005c4ce7321c5ae57fc8b4a14c7f4/sample.GTF_enst_annotation.txt)2) Gene wise chromosome l...2107 days ago
Genome Assembly Tools and Software - PART1 !!
...sembly, with concomitant gene annotation. SWAP-Assembler 2...NA-Seq reads Comprehensive annotation and quantification of transcr...s are outstanding problems in functional genomics. Rnnotator is an aut...e signals, and genome feature annotations. It provides an easy way for...2687 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases...t levels, visualization, differential gene expression, alternative splicing, functional...
2352 days ago
Tools for bacterial whole genome annotation
...steps if you want to do functional profiling and pathway analysi...AST. NCBI Prokaryotic Genome Annotation Pipeline is designed to annot...ted tool for Bacterial GEnome Annotation ComparisON), a fast tool for...thesizes these data into gene annotations having evidence-based qualit...2333 days ago
List of visualization tools for network biology
...n of large networks http://www.ondex.org/ Osprey Visualization and annotation of biological networks http:.../AVIS2 bioPIXIE Discovery of biological networks from diverse functional genomic data http://pixie.pr...2289 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final r...tware/abyss-explorer BamView Genome browser and annotation tool that allows visualizatio...k/resources/software/artemis/ DNannotator Annotation web toolkit for regional geno...2285 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated i...2275 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made eas...thon - Mark Pilgrim (2.3) From Python to NumPy Full Stack Python Functional...2256 days ago
Tools to Predict the Impact of Missense Variants !
...r‐2, MutationAssessor, Combined Annotation Dependent Depletion, LRT, phy...essor (MASS)“Predicts the functional impact of amino acid substitu...ause the element has been under functional constraint. We refer to these...pathogenic variantsh Combined Annotation Dependent Depletion (CADD)&ld...2204 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software...integrates multiple software tools for assembly, annotation, and visualization of mitogen...ersion of the MITOS pipeline, which automates the annotation of mitochondrial genomes. It...244 days ago
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