Results for "GATK"
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Next Generation Sequencing (NGS) Tutorials
...ation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/ Metagenomics:http://www.nbi...3493 days ago
- ...f three statistically-based variant detection tools:* SAMtools: Mpileup* GATK: Unified Genotyper* FreeBayes...ften allow more control over branching and iteration logic. WGS/exome GATK-based variant calling pipelin...
3659 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and t...1819 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1752 days ago
- List of publically available databases on google server. More at https://software.broadinstitute.org/gatk/download/bundle ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/. ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/
1549 days ago
Best Practices for Variant Calling with the GATK
...tations below were filmed during the March 2015 GATK Workshop, part of the BroadE...rsion of Broad’s Genome Analysis Toolkit (GATK) was version 3.3....PDF Video 03/19/15 Introduction to the GATK Geraldine Van der Auwera PD...1540 days ago
