Results for "GO"
Users
About me: ...amniotes evolution. I (We) develop certain computational pipeline, and algorithms to harness the huge amo...o get a better sense of what we do. Collaboration and ideas are welcome. Google scholar @ http://scholar....7 days ago
- About me: https://sites.google.com/site/seqomics/home http://about.me/vibes100
1359 days ago
- +41 more Users
Blogs
Five unique traits of effective computational biologist
...ks of their profession are not only good programmer but also expert...l stuff. Moreover, In order to be a good and effective biological pr...t’s absolutely necessary. The good biological programmers lear...erflow or the BioStars forums never got anything resembling an answe...3947 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...mputer or server is not connected to the Internet. Download Perl module: Go to CPAN Search website and se...and make test.# perl Makefile.PLChecking if your kit is complete...Looks goodWriting Makefile for XML::Pa...3946 days ago
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Bookmarks
- ...ter explain the data computationally. I found this online bioinformatics courses really interesting where they are covering the common algorithms underlying the followin...
3941 days ago
Online Courses for biology beginners
Most of the time we face some biological problems while analysing our data computationally. This bookmark is being created to provide list of all free online courses at one place. If you know any other good online cource resources to learn biology please let me know.3940 days ago
- +396 more Bookmarks
Files
- In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.
3949 days ago
Regular Expression Cheat Sheet
...r Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly regular e...3949 days ago
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Discussion topics
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3947 days ago
- ...ancy can be used to store them in a much smaller storage space. (Source:e-article from Alex Armstrong) http://www.i-programmer.info/news/181-algorithms/4537-a-new-dna-sequence...
3916 days ago
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Pages
Bio++ : C Language libraries for your biological need
...y abstract and fluent to describe algorithms and interactions in a w...ogical programming? If yes there is good news for you. Bio++ 1.9.0 i...hood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree...Evol Biol. 2007; 7: 242.Boussau B, Gouy M. Efficient likelihood com...3944 days ago
BioRuby :Ruby packages for biologist
...wer. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF) and KEGGOrthology (Bio::KEGG::KO). The...3944 days ago
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Top-level pages
- ...m a single discipline. The ultimate goal of the field is to enable t...atics: (1) the development of new algorithms and statistics with whi..., and expression data clustering. Algorithmic development is an impo...ocation of a protein. The ultimate goal of sequence annotation is t...
3944 days ago
- ...ations.This page Covering theory, algorithms, and methodologies, as...ail as legitimate or spam. Common algorithms include decision tree l...avy weight. I use R, free, and with good data mining packages such a...amining books that are available on google books: Data mining and b...
3943 days ago
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Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3949 days ago
- Google provide free class for people with...xperience who want to learn Python. The google python class includes wri...coding. These materials are used within Google to introduce Python to pe...e. Find more @ https://developers.google.com/edu/python/
3948 days ago
- +99 more News
Opportunity posts
- ...ll start on October 1, 2013 until 30.09.2016. The period of employment is governed by the Fixed Term Resea...cs). Fluency in spoken and written English is required. Applicants with a good knowledge of software engin...
3944 days ago
- ...on(s) : One Stipend: Rs.22,000/- P.M. (consolidated). Essential Qualifications: Ph.D. in Bioinformatics. Desirable: Working experience in algorithm development and sequence...
3941 days ago
- +263 more Opportunity posts
ResearchLabs posts
- The group develops algorithms for a diverse set of problems in computational molecular biology. They are particularly interested in predicting specificity in protein interactio...
3945 days ago
The Laboratoire de genomique fonctionelle
...produce numerous protein isoforms through alternative pre-mRNA splicing. Protein isoforms from a single gene can have diverse, and in some cases antagonistic, functions. AS plays a...3944 days ago
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Fun
Bioinformatician become producer/director !!!
...ment to hona hi tha. Mera sequence mera base. Markov aapke hai kaun. Algo Banya Apne. MOTIF mil gaya....ure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Algorithm Se Program Tak Haan Mai...3915 days ago
Perl Poem: Parse it in both Perl and English!
...aceful;study if able; write me if-you-please; sort your feelings, reset goals, seek (friends, family, an..., yet. accept (yourself, changes),bind (grief, despair); require truth, goodness if-you-will, each momen...3915 days ago
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Video
Bioinformatics Algorithms (Part 1) with Pavel Pevzner, Phillip E. C. Compeau,
The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.3866 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...e: Wednesday, February 01, 2012, 3:00:00 PM Category: Wednesday Afternoon Lectu...only faster computers; it will require smarter algorithms. We show how ideas from...00:58:06 Permanent link: http://videocast.nih.gov/launch.asp?175633898 days ago
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Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...a blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7...If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7...1143 days ago
Parse a genbank file using regular expressions
...{ # protein product begins print "Translation: "; $protein = $2; $trans = 1; } elsif ($trans) { # translation still going on if (!/"/) { #...2913 days ago
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Polls
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3523 days ago
Do you think it's important for everyone to pass BINC exam?
The Department of Biotechnology (DBT), Government of India has instituted BINC examination with the objective of evaluating the Bioinformatics knowledge & skills of students. Do you think it is important ?2912 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...) lab page (http://gmbe.mam.tubitak.gov.tr/en) and BOL page http://b...ics is the only way to achieve this goal. What fascinates you a...project. For this reason, the major goal of my bioinformatics compan...hmarking, researchers should have a good biological background in th...2358 days ago
Groups
...on form of blindness to Alzheimer's disease. However, as a computational biologist or bioinformatician you hack the entire genome to understand the god's written sophiticated genet...3949 days ago
...e formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is t...of BioJava in biological researchs. Reference @ http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467744/...3900 days ago
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Tags
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entre...Tags: Functional annotation, real-time enrichment analysis, KEGG, GO, GeneOntology, REACTOME, cancer db
2868 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of expressed genes follow but also to disclose th...
Tags: pathway enrichment, kegg, reactome, go, blast2go, RNA-Seq, RNA, Sequencing
3492 days ago
Comments
Comment on "Tools for RNA classification"
...s a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA sequence...417 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...Ensembl. Gene annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orthologous genes: Identify the orthologous genes between the genomes u...420 days ago
- +220 more Comments
