Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used techniqu...e for performing differential expression analysis, including: DESeq2: This R...d for differential expression analysis of RNA-Seq data. It uses a generalized linear model to model the co...432 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny analysis: Choose the species: Sel...nder or OrthoMCL. Orthologous genes are genes that are homologous and...435 days ago
Comment on "Running Trinity on RNA-seq !"
...e: Quantifying transcript and gene abundance. This is a prerequi...rations. Perform differential expression analysis. Trinity provides direct support for several DE analysis methods, including edgeR, DES...inity transcriptome assemblies for gene structure annotation using P...2135 days ago
Comment on "Five unique traits of effective computational biologist"
...ioinformatics training for life scientists. Brief Bioinform.14(5):528-37. [link] Slonim DK, Yanai I (2009) Getting Started in Gene Expression Microarray Analysis. PLoS Comput Biol5(10):...3841 days ago