Results for "Gene Expression."
Top-level pages
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and r...ool and produce others. * NextGENe - de novo and reference assem...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. * gnuma...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic pla...3254 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the diff...types are metabolic pathways, gene regulatory pathways, and sign...ding, visualizing and sharing gene regulatory network models ove...ml GenMAPP Visualization of gene expression and other genomic...d pathways and reactions from gene lists...2299 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools in...ntegrates microarray and next generation sequencing data Go...al-based prior p(genotype) to generate posterior probabilities...end using GATK or samtools to generate) Output: out_vcf UN...e version gives comprehensive genetic rep...2921 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? C...to research students in the areas of general and applied science. BD B...onsider one of these prestigious (and generous) endowments. Whitaker In...ientific knowledge and train the next generation...2950 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discov...nome.Interspersed RepeatsProcessed Pseudogenes, Retrotranscripts, SINES - Non-functional copies of RNA genes which have been reintegrated..."able was I ere I saw elba")—with genetic pal...2223 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on f...ene list in the form of Entrez Gene ID (UIDs) or Official gene sy... The advantage of using GeneSCF ove...2883 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 &...29/sample.GTF) file to annotation table format. It generated two files1) Transcript w...ae57fc8b4a14c7f4/sample.GTF_enst_annotation.txt)2) Gene wise c...
2118 days ago
- alignment: the mapping of a raw sequence read to a location within a ref...quality scores for each base; usually generated by sequencing machines....structural rearrangements, including gene fusions. Phred-scaled probab...rangements. See also BCF format. NextGenerationS...
2881 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence re...d Read LinkAge COCACOLA: a general framework for binning cont...many functionalities, and can generate much longer repeats than...REconstruct 16S ribosomal RNA Genes from MetagenOmic data an...interpretation and hypothesis generation....2698 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and softwar...tain modules that are of more general use and even classes that...d to only one of all possible gene isoforms miyagawa/web-scrape...erface to 0MQ2 trizen/obmenu-generator - A fast menu gener...lection of utilities for Next-Generation...2501 days ago
