Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have...meaning branch or twig. cladogenesis -- The development of a ne...a descended from a major cladogenesis event, recognized by posse...group is said to be extinct. genetic marker -- A DNA sequence t...a family includes one or more genera, and...2474 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (u...e Fusion transcript prediction using gene k-mers profiles of the R...ection of mutations in targeted third-generation NGS data (can distingui...r Clustering of reads from different genes and d...2383 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00&rsq...xpression level for each gene across a large population of...cient for studying heterogeneous systems, e.g. early d...e-Cell Resolution of Temporal Gene Expression during Heart Devel...der: Identify ordering effect genes in si...2362 days ago
2362 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in...includes prediction of protein-coding genes, as well as other functional...ctural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...y, against a nonredundant set of KEGG GENES. KOAL...2343 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\...($m,$n) = ($n,$m%$n) while $n; print $a*$b/$m' # Generate 10 random numbers between...e->new($l); print @r while @r = $p->next' # Generate th...2314 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically...://github.com/juliemkauffman/DyCoNet GENeVis Network and pathway visualization http://tinyurl.com/genevis/ GEPHI Interactive...sysfys/software/rematch/ SNOW Gene mappin...2300 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologi...ression analysis, Splicing events and gene fusion detection. Strand NGS...iscovery like identification of novel genes, exons and novel splice junc...tualization on the set of interesting genes from...2276 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organism...r a eukaryotic species to gain a gene by HGT, foreign DNA must ente...selection, despite potential for genetic incompatibility with the h...nbsp;download 22355228 GeneMarkS&n...862 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | B...oporetech/ont-assembly-polish Generade-nl/TULIP: TULIP - The Unc...Pipeline https://github.com/Generade-nl/TULIP www.nature.com...zation platform for synthetic gene design | Bioinformatics | Oxf.../1471-2105-15-211 Palindromic gene amplif...2253 days ago