Results for "Gene enrichment"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (u...e Fusion transcript prediction using gene k-mers profiles of the R...ection of mutations in targeted third-generation NGS data (can distingui...r Clustering of reads from different genes and...2368 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00&rsq...xpression level for each gene across a large population of...cient for studying heterogeneous systems, e.g. early d...e-Cell Resolution of Temporal Gene Expression during Heart Devel...der: Identify ordering effect genes in s...2348 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single a...ontrol, read alignment, quantification of gene and transcript levels, visualization, differential gene expression, alternative splic...ith limma, Glimma and edgeR Differential gene and t...
2348 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in...includes prediction of protein-coding genes, as well as other functional...ctural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...y, against a nonredundant set of KEGG GENES. KOA...2329 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically...://github.com/juliemkauffman/DyCoNet GENeVis Network and pathway visualization http://tinyurl.com/genevis/ GEPHI Interactive...sysfys/software/rematch/ SNOW Gene mappi...2285 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologi...ression analysis, Splicing events and gene fusion detection. Strand NGS...iscovery like identification of novel genes, exons and novel splice junc...tualization on the set of interesting genes from...2261 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms...or a eukaryotic species to gain a gene by HGT, foreign DNA must ente...selection, despite potential for genetic incompatibility with the h... download 22355228 GeneMarkS&...847 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | B...oporetech/ont-assembly-polish Generade-nl/TULIP: TULIP - The Unc...Pipeline https://github.com/Generade-nl/TULIP www.nature.com...zation platform for synthetic gene design | Bioinformatics | Oxf.../1471-2105-15-211 Palindromic gene ampli...2239 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurre...synthesis of an ancestral gene and expression of the co...ariety of and much more ancient genes. Over the last decade,...2- Your dataset has a good phylogenetic si...2176 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula...evalue bitscore 1. qseqid query (e.g., gene) sequ...2136 days ago
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