Results for "Gene expression"
Top-level pages
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have...meaning branch or twig. cladogenesis -- The development of a ne...a descended from a major cladogenesis event, recognized by posse...group is said to be extinct. genetic marker -- A DNA sequence t...a family includes one or more genera, an...2456 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...h/ Salmon Quantification of the expression of transcripts using RN...usion transcript prediction using gene k-mers profiles of the R...on of mutations in targeted third-generation NGS data (can distingui...lustering of reads from different genes and different species based on&nbs...2365 days ago
Single Cell RNAseq data analysis tutorial !!
...ce Measures the average expression level for each gene across a large population of...the stochastic nature of gene expression Following are the useful l...e-Cell Resolution of Temporal Gene Expression during Heart Development htt...2344 days ago
- ...quality control, read alignment, quantification of gene and transcript levels, visualization, differential gene expression, alternative splicing,...s 1-2-3 with limma, Glimma and edgeR Differential gene and transcript expression analysis of RNA-seq experimen...
2344 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in...includes prediction of protein-coding genes, as well as other functional...ctural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...y, against a nonredundant set of KEGG GENES. KOA...2325 days ago
PerlOneLiner for Bioinformatician
...%$n) while $n; print $a*$b/$m' # Generate 10 random numbers between...int @r while @r = $p->next' # Generate the power setperl -MList:...t only lines that match a regular expressionperl -ne '/regex/ && p...lines that do not match a regular expressionperl -ne '!/regex/ &&...2296 days ago
List of visualization tools for network biology
...ithub.com/juliemkauffman/DyCoNet GENeVis Network and pathway...visualization http://tinyurl.com/genevis/ GEPHI Interactive...ys/software/rematch/ SNOW Gene mapping on a reference or hum...roughput experiments, conserved coexpression and previous knowledge derive...2282 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...riptome/ Genome alignment, Differential expression analysis, Splicing events and gene fusion detection. Strand NGS...discovery like identification of novel genes, exons and novel splice junc...extualization on the set of interesting genes from the data by allowing downstre...2258 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms...or a eukaryotic species to gain a gene by HGT, foreign DNA must ente...selection, despite potential for genetic incompatibility with the h... download 22355228 GeneMarkS&...844 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | B...oporetech/ont-assembly-polish Generade-nl/TULIP: TULIP - The Unc...Pipeline https://github.com/Generade-nl/TULIP www.nature.com...zation platform for synthetic gene design | Bioinformatics | Oxf.../1471-2105-15-211 Palindromic gene ampli...2235 days ago
