Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, standalone software/tools,...632 days ago
Levenshtein and Damerau-Levenshtein distance !
Levenshtein Distance Also known as Edit Distance, it is the number of transformations....Edit Distance is very easy to implement, and it is a popular challenge during code interviews Additionally, so...945 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldq...929 days ago
Classification of SARS-CoV2 Variant !
...another country or a province of a large and populous country.It should differ from its ancestor by at least one nucleotide.At least 95% of its genetic code should have been sequenced at...885 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignme...872 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional An...mouse. CVTree -- A Phylogenetic Tree Reconstruction Tool Base...Whole Genomes Construct phylogenetic tree of microorganisms based...search. MANTIS -- a phylogenetic framework for multi-species g...672 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barto...ons - Fundamental Theorem. Genetic Variation 1a. Lewontin, R. C...of Drosophila pseudoobscura. Genetics 27: 363-394. Recombinatio...s within chromosome sections. Genetics 118: 445-459. 2. Boyle E...672 days ago
Understanding DUMP files from NCBI Taxonomy database !
...gdom, ...) embl code -- locus-name prefix; not unique...division from parent genetic code id -- see gencode.dmp file &nbs...1 or 0) -- 1 if node inherits genetic code from parent m...AM, PRI... comments Genetic codes file (gencode.dmp):...655 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barto...ons - Fundamental Theorem. Genetic Variation 1a. Lewontin, R. C...of Drosophila pseudoobscura. Genetics 27: 363-394. Recombinatio...s within chromosome sections. Genetics 118: 445-459. 2. Boyle E...572 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical lo...including the development of genetic diseases, chromosomal abnorma...oints can lead to the loss of genetic material, whereas interstitia...or unbalanced distribution of genetic material. Unbalanced transloc...419 days ago