Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github....cfutils.c gcc -g -Wall -O2 -I. -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -g -Wall -O2 -I. -c...ing: cython/variantcaller.pyx:529:9: Unreachable code building 'variantcaller' ext...2021 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeat...#For more helps ... check out this #This bit of code will do the job: $string =...1552 days ago
Exit Bash Script When Any Command Fails
This can actually be done with a single line using the set...ript to exit if any commands return a non-zero exit code. set -e #all other comma...'echo "\"${last_command}\" command filed with exit code $?."' EXIT #3-----------...1522 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ m...* Redistributions of source code must retain the above copyrig...n also contains Visual Studio Code software binaries from Mi cr...and Microsoft's Visual Studio Code software is classified by M...h7725739_2 ... installing: pycodestyle-2.5.0-py37_0 ... instal...1513 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use A...ov/pub/taxonomy/taxdump.tar.gz'; my $file = 'taxdump.tar.gz'; my $code = getstore($url, $file); #print $code; my $ae = Archive::Extract...1162 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:~/vinodLab/Genepi$ conda env create -f cov...##################################################### | 100% font-ttf-source-code | 684 KB | ###############...925 days ago
Run Pango on your multifasta file !
#More at https://cov-lineages.org/resources/pangolin/usage.html (base) [jnarayan@hn...fier from version 0.24.2 when using version 1.0.1. This might lead to breaking code or invalid results. Use at yo...889 days ago
825 days ago