2728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological...detection, RNA-Seq, ChIP-Seq, Genome Browser, etc (entire list on website...SnpEff Input: BAM Reference Genome: FASTA indexed with SAMtools f...alf, CNV file -cnv Reference genome: -refgene (created in MATLAB,...2923 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive...ave been copied to another region of the genome.Interspersed RepeatsProcessed...es which have been reintegrated into the genome...2225 days ago
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – Th...alable and fully parallelized Genome Assembler There is a growi...er designed to assemble virus genomes that have no repeat sequence...Phusion 2.1c – Assembly Genome...2700 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends...concordant if they can be mapped to the reference genome as “expected”: (a...sp;a read that can only be mapped to the reference genome...2536 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and...script to convert epub documents to documents that browsers can natively browse. jmcnam...rary yuki-kimoto/gitweblite - Git repository browser. This is gtiweb.cgi clone to...2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq d...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-i...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...2385 days ago
2365 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&n...es and reveal cell-type-specific expression changes in type 2 diabetes http://genome....2365 days ago