Results for "Genome Interpretation"
Blogs
LiftOver is a necesary step to bring all genetical analysis to the same reference...ftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome as...r from one build to another (3) Convert both genome positio...2173 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trinity-v2.6.6 ➜ cd trinityrna...ter **, this functionality continues to be under development) # # --genome_guided_bam :genome guided...
2146 days ago
List of motif discovery tools !
...Find information about protein binding. ANNIE -- ANNotation and Interpretation Environment for Prote...PEDANT -- Protein Extraction, Description and ANalysis Tool Conduct genome wide functional and structural analys...2006 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about...-p \ -d \ genomeSize=[g|m|k] \...canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m...1958 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1)...8) Nanopolish (v. 0.8.3) I have used the following tools to assess genome assembl...1943 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs.io...1357 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 bi...n systems. The company’s genome services are suitable for cus...ration sequencing services including genomes, targeted (re)-sequencing, h...India. Popular mentions – MedGenome (India)...1272 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling...algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...iptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio A...long transcriptomic reads to a genome, guided...1005 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...hod for small to medium-sized genomes. What is de novo genome assembly?The method of taking...the DNA originated relates to genome assembly. No previous knowled...on a sequencing computer in a genome sequencing experiment. Depend...ew/42542/trimmomatic-command Genome Assembly:The object of this p...1217 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based...iniconda3/envs/wgd/make -j 4 make insatall Take the sugarcane genome Saccharum spontaneum L as an example. The genome is 8-pl...1168 days ago
