Results for "Genome Project"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
...ate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Bre...E: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome Res. 22, 557-67 (2012). KMC:...Vienna, Austria. URL http://www.R-project.org/. RATT: RATT: Rapid Anno...1041 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (f...optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...l variant screenshots with annotation tracks (ASCIIGenome)...871 days ago
Useful Bioinformatics Analysis Tools !
...obust relative compression of genomes with random access, Bio...Genotype compression in large projects, Bioinformatics, ...Compressor of collections of genomes given in Variant Call Format...Genotype compression in large projects, biorxiv.org, 2020...857 days ago
List of comparative genomics resources !
...struction Tool Based on Whole Genomes Construct phylogenetic tree...risons of Multiple Vertebrate Genomes Access to whole genome alig...ase dedicated to the study of genome conservation. OMA -- the Orthologous MAtrix project Explore orthologous relation...671 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome....671 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome....572 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/rele...//github.com/stephens999/ashr, https://cran.r-project.org/web/packages/ashr/index.h...l/limma.html MetaCycle - https://cran.r-project.org/web/packages/MetaCycle/in...538 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often us...ods for discovering tandem repeats in genomes: Tandem Repeat Finder:...ehensively identify tandem repeats in genomes...417 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types...s to follow for mapping reads to a genome: Choose a read mapper: T...question. Index the reference genome: Before mapping reads, the re...ecifying the input data, reference genome,...417 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that...rward. They can be present in genomes and have various biological...or discovering palindromes in genomes: Direct sequence search...tify palindromic regions in a genome. It involves plotting the gen...417 days ago
