Results for "Genomes"
Top-level pages
Computational resources for TE discovery and TE detection
...org/repeat_runner/index.html RepeatScout http://repeatscout.bioprojects.org/ repeat-match http://mummer.sourceforge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bur...2270 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...gn DNA may become “domesticated” in the recipient genome and provide novel function. Following are the popular tool to detect HGT in genomes: T-REX / 3.22 HGT...846 days ago
Some useful Bioinformatics links
...as-odu/Disco SAGE: String-overlap Assembly of GEnomes | BMC Bioinformatics | Full T...vo assembler based on the FMD-index for large genomes https://github.com/lh3/fermi...ithub.io/karyoploter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://b...2237 days ago
Gap filling or Contigs extensions tools !
...ing using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Toward almost closed genomes with GapFiller". There are al...2161 days ago
Bioinformatics tools for genome assembly !
...or single-cell and multi-cell bacterial genomes, as well as small eukaryotic genomes. ABySS: A parallelized a...y used for assembling large and complex genomes. MaSuRCA: A hybrid assem...on, suitable for small and medium-sized genomes. Unicycler: A hybrid ass...282 days ago
Mitochondrial genome assembly tools !
...inder is a pipeline to assemble mitochondrial genomes and annotate mitochondrial ge...d for the iterative assembly of mitochondrial genomes. It starts with a reference m...ol designed for de novo assembly of organelle genomes, including mitochondria. It u...238 days ago
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