Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...4) Epigenetics (4.780 :: 5.081) Frontiers in Genetics G3-Genes Genomes Genetics (3.198 :: 3.508...ientific Data FEBS Journal (4.001 :: 4.068) Tree Genetics & Genomes (2.451 :: 2.563) 3: L...1841 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html1972 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
It is recommended to used genomes (N50 > 1Mb) for synteny analysis https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2026-42013 days ago
Comment on "Basic command-line to run BLAST"
...] wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/protein/protein....1:39-- ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/protein/protein....TYPE I ... done. ==> CWD (1) /genomes/Homo_sapiens/protein ... done...] wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Mus_musculus/protein/protein....2243 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...for fun Blue Collar Bioinformatics Bioinformatics Bits and Pieces Bits of DNA Bioinformatics Zen MassGenomics Kevin’s GATTACA World Genomes Unzipped Xiaole Shirle...2319 days ago
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0 @ http://binf.gmu.edu:8080/GeneOrder4.0/2727 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae—and the proteins they are predicted to encode—was un...2732 days ago
Comment on "Alignment of closely related whole genomes/scaffolds"
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works, I have...3018 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...re some resources that I found useful:ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/reference/ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammal...3620 days ago