Commercial and public next-gen-seq (NGS) software
...Sequencing data analysis. JMP Genomics - Next gen visualization and...ource for POSIX. GMAP - GMAP (Genomic Mapping and Alignment Program...whom are at The Institute for Genomic Research in Maryland, USA. PO...' read Extension (SSAKE) is a genomics application for aggressively...3519 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by...3549 days ago
Apps for Busy Bioinformatics Researchers !!!
...d Gain first hand experience identifying the genomic basis of disease by analyzing...data sets, and cross-references with various genomic databases. Collaborate on va...application to create a music melody from DTC-Genomics data. If you own 23andMe (Mo...3542 days ago
Software packages for next gen sequence analysis
...quencing data analysis. * JMP Genomics - Next gen visualization and...rce for POSIX. * GMAP - GMAP (Genomic Mapping and Alignment Program...whom are at The Institute for Genomic Research in Maryland, USA. PO...' read Extension (SSAKE) is a genomics application for aggressively...3243 days ago
Comprehensive list of visualization tools for biological pathways
...rceForge/EPE.html GenMAPP Visualization of gene expression and other genomic data on maps representing bio...ArrayXPath/ GEPAT Integrated analysis of transcriptome data in genomic, proteomic and metabolic cont...2287 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...TCGA databases Lasergene Genomics Suite Comprehensive NGS s...ome-wide association studies, genomic prediction, copy number analy...lso be imported from Complete Genomics (cg_process_sample command),...D) each variant hits, variant genomic location and coding effect (b...2909 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Ki...2211 days ago
2869 days ago
Genome Assembly Tools and Software - PART1 !!
...COCACOLA – Binning Metagenomic Contigs using Sequence COmpos...der – Gene-targeted Metagenomic Assembler Metagenomics can...ribosomal RNA Genes from MetagenOmic data an assembly tool for...of Sequence Reads) is a genomics application that allows hypo...2686 days ago
List of visualization tools for network biology
...e regulation networks and protein interaction maps. http://www.ariadnegenomics.com/downloads/ PIVOT ...oPIXIE Discovery of biological networks from diverse functional genomic data http://pixie.princeton....2288 days ago