Results for "Genotype"
Bookmarks
Software developed in pevsner lab
...ysis and Visualization of SNP Data pediSNP: Analyze SNP Data From a Pedigree of Two Generations kcoeff: Calculate Cotterman Coefficients of SNP Genotype Data triPOD: Detects chromos...3495 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...ometry. Genetics and population analysis: Linkage analysis, association analysis, population simulation, haplotyping, marker discovery, genotype calling. Systems biology...3495 days ago
- ...software package that performs genotype calling, genotype phasing, imputation of ungeno...ersion 4.1 has a more accurate genotype phasing algorithm and a very...ing relationships when phasing genotypes, please use version 4.0...987 The citation for Beagle's genotype imputation algorithm is: B L...
2743 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...were misled by the punchy name! About Chromosome Painting Painting is an efficient way of identifying important haplotype information from dense genotype data. It describes ancestry i...2634 days ago
Referee: Genome assembly quality scores
...ition in the genome assembly. We accomplish this by first calculating genotype likelihoods for every site. For a given site in a diploid genome, there are 10 possible genotypes (AA, AC, AG, AT, CC, CG, CT,...2005 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
...ed to deal with these errors in the hopes of obtaining more robust STR genotypes. In particular, it accomplis...while accounting for STR artifacts Utilizing phased SNP haplotypes to genotype and phase STRs...1882 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...T uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in sequencing data and predicts the genotype. All this takes less than 1 h...1556 days ago
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads MALVA calls correctly more indels than the most widely adopted genotyping pipelines Mapping-free...1556 days ago
Best Practices for Variant Calling with the GATK
...ity score recalibration Bertrand Haas PDF Video 03/19/15 Introduction to working with variants Yossi Farjoun PDF Video 03/19/15 Genotype refinement Laura Gauthier P...1531 days ago
- Resource for downloading all the HISAT2 related files Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915 (2019). https://doi.org/10.1038/s41587-019-0201-4
959 days ago
