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Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3792 days ago
List of bioinformatics open source projects/software.
...iopython.org/wiki/Main_Page Python language toolkit BioRails https://github.com/biorails a data manageme...uk/intact/ molecular interaction database InterMine http://intermine.github.io/intermine.org/ Extensive...3770 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an...3637 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...rch 2014; for analyzing sequencing data in family studies of inherited diseases; variant calls for a family in VCF file; still in alpha-testing on github, example data uses 1000 genom...2922 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...butions of Linux might work as well. Documentation:http://genescf.kandurilab.org/documentation.php Report issues on Biostars or GitHub Project page -------...2885 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf...nsEMBL GTF (Ex: https://gist.githubusercontent.com/santhilalsubha...ranscripts (Ex: https://gist.githubusercontent.com/santhilalsubha...bout genes (Ex: https://gist.githubusercontent.com/santhilalsubha...
2119 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2699 days ago
Awesome perl frameworks, libraries and software - PART 1
...on For Perl centreon/centreon-plugins - Collection of plugins for softwares compatible with Nagios plugins fayland/perl-net-github - Perl interface to GitHub Perl-Critic/Perl-Critic ...2502 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...;k-mers) https://combine-lab.github.io/salmon/ RNA-Skim RNA-seq...ads Software (Java) https://github.com/ChimeRScope/ChimeRScope/w...s) Software (Python) http://github.com/cbib/MICADo General mapp...) Software (Python) https://github.com/fanhuan/AAF kSNP v3 Ref...2384 days ago
Single Cell RNAseq data analysis tutorial !!
...single-cell RNA-seq analysis software https://github.com/diazlab/SCell Beta-Poiss...for single-cell RNA-seq data analyses https://github.com/nghiavtr/BPSC Sincera: A...xpression data during differentiation https://github.com/hmatsu1226/SCOUP scLVM i...2364 days ago
