Results for "GitHub"
Bio-Scripts
# Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe192277 days ago
Mapping with BWA-mem or BWA-sampe in one go with python script !
...eds to be aligned in paired read mode. BESST provides a script (https://github.com/ksahlin/BESST/blob/master...call to use BWA-sampe as the paired read alignment pipeline. https://github.com/ksahlin/BESST/blob/master...2137 days ago
- ➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilter.git Cloning into 'bloomfilter'... remote: Counting objects: 867, done. remote: Compressing objects: 100% (11/11...
2164 days ago
- ...' ]; Trinity version: Trinity-v2.6.6 ** NOTE: Latest version of Trinity is Trinity-v2.7.0-PRERELEASE, and can be obtained at: https://github.com/trinityrnaseq/trinityrnas...
2140 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into 'Porechop'... remote: Counting objects: 1579, done. remote: Total 1579 (delta 0), reused 0 (de...2119 days ago
- ➜ Tools git:(master) ✗ git clone https://github.com/Nextomics/nextsv.git Cloning into 'nextsv'... remote: Counting objects: 369, done. remote: Total 369 (delta 0), reused 0 (delt...
2112 days ago
- ...018-08-30 11:47:20-- https://github.com/broadinstitute/gatk/relea...1/gatk-4.0.2.1.zip Resolving github.com (github.com)... 192.30.25...018-08-30 11:47:21-- https://github-production-release-asset-2e65...ion%2Foctet-stream Resolving github-production-release-asset-2e65...
2088 days ago
- ...deltas: 100% (290/290), completed with 127 local objects. From https://github.com/robbyrussell/oh-my-zsh...gins/git/git.plugin.zsh | 5 +- plugins/github/README.md...
2087 days ago
Installing pb-assembly on Linux !
...# # https://github.com/PacificBiosciences/pbbioc...# # Please see https://github.com/PacificBiosciences/pbbioc...2047 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination pat...n empty directory. (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/pb-cdunn/FALCON-examples....
2047 days ago
