Results for "Graph"
Top-level pages
...field that is may not be your strong point. Excel is fine for creating graphs. If you’re serious abo...search focuses on image informatics and scalable querying and mining of graphs.For more detail visit: ...3938 days ago
- ...gger problem. Dynamic programming The shortest path in a weighted graph can be found by using the sho...uts. This can solve many problems such as the maximum flow for directed graphs, notably by using the simple...
3938 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...or de novo short read assembly using de Bruijn graphs. Zerbino & Birney, Genom...:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assemb...bsite UK RAD Sequencing Wiki page, with bibliography and RADTools software downlo...3771 days ago
List of bioinformatics open source projects/software.
...ramework for molecular modeling and visualization designed for rapid prototyping Bio4j http://bio4j.com/ Bio4j is a bioinformatics platform and graph based database built around m...3748 days ago
Commercial and public next-gen-seq (NGS) software
...high quality assemblies from short reads. Assemblies are presented in a graph form that retains ambiguities...l A. Pevzner from UCSD (published in Genome Research). Uses a de Bruijn graph approach. MIRA2 - MIRA (Mimic...3511 days ago
Software packages for next gen sequence analysis
...high quality assemblies from short reads. Assemblies are presented in a graph form that retains ambiguities...l A. Pevzner from UCSD (published in Genome Research). Uses a de Bruijn graph approach. * MIRA2 - MIRA (Mim...3234 days ago
Genome Assembly Tools and Software - PART1 !!
...protein-coding genes using a graph structure combining both de B...adopts multi-step bi-directed graph (MSG). With MSG, the standard...mbly, homology-guided overlap graph construction, and careful gra...sembly via Succinct de Bruijn graph MEGAHIT is a single node a...2677 days ago
Awesome perl frameworks, libraries and software - PART 1
...t for monitoring MySQL servers rizen/Facebook-Graph - A perl module to help navigate the intricacies of the Facebook Graph API. lhost/sendxmpp - p...etiker/mrtg - MRTG - Multi Router Traffic Grapher monitoring-plugins/monitor...2481 days ago
- ...\ -o hybrid_assembly In turn, these parameters mean use 4 threads max memory is 32Gb use 3 kmer values to build the de bruijn graph(s) - 31, 51 and 71 only run...
2343 days ago
Run miniasm assembler on nanopore reads !
...p;de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format....2322 days ago
