Results for "Greengenes database"
Top-level pages
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional anno...GeneSCF supports more organisms from V1.1. Examples to download database as simple text file using GeneSCF "prepare_database" module, 1) https://www.biost...2886 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequenc...es persistence to such objects through relational databases that at least partially correspond the Clotho data model. Beyond database access and data model API sup...2700 days ago
Awesome perl frameworks, libraries and software - PART 1
...nbsp;- Perl binding for Redis database pplu/aws-sdk-perl - A c...ds! rjust/defects4j - A Database of Existing Faults to Enable...sp;- Perl module representing database URIs semifor/twirc - Tw...perl - Create MaxMind DB database files mattn/p5-Growl-Any&nbs...2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA...of short reads based on a comprehensive sequence database Software (C++) https://ccb....s to reads by k-mers searches in precomputed database Software (C++/Python) https...2385 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed an...pipeline depends on several internal databases and is not currently availab...e their genomes and to create genome databases. It identifies repeats, alig...2346 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the... DBI module has been the focal point of database access since its invention. I...to provide the same interface to huge relational databases and flat files alike through...2336 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to ma...cal networks and Petri nets based on life-science database information http://agbi.tech...user-given stoichiometric metabolic models into a database collected from public data so...2302 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the fr...real system locate file — find all instances of file using indexed database built from the updatedb comma...2295 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-noteb...packages: 100%Selecting previously unselected package python-pymysql.(Reading database ... 435155 files and director...
2204 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensi...sp;http://soap.genomics.org.cn/index.html Single-sample High-quality variant database (for example, dbSNP) Package...2110 days ago
