Results for "Greengenes database"
Bio-Scripts
(base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...1456 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/..._8GB_201904_UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150mers.kmer_distrib minikrak...1228 days ago
Install htop in elementary/Ubuntu OS !
neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get install htop Reading package lis...kB in 0s (239 kB/s) Selecting previously unselected package htop. (Reading database ... 176684 files and director...1166 days ago
Parse the NCBI taxonomy database with Perl !
use Bio::DB::Taxonomy; use warnings; my $sps="human"; # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy-...1186 days ago
Perl script to get all the descendent in a tree !
use warnings; use Bio::DB::Taxonomy; #Rotifera 10190 # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy-...1178 days ago
Conda command to install checkV
(mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-for...g transaction: \ CheckV v1.0.1 an external database which needs to be downloaded and unarchived. The link for the database can be found in CheckV's...649 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Insta...he system and download the mandatory database # BEGIN { my @import_m...print "\nDownloading third party database for Alienomics\n"; #Instal...s://www.arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SILVA_...1174 days ago
- #use strict; use warnings; use ExtUtils::Installed; use L...nstalled in the system and download the mandatory database # BEGIN { my @import_m...ipt else here print "\nDownloading third party database for Alienomics\n"; pri...
1172 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ sudo apt install r-base-core [s...es from packages: 100% Selecting previously unselected package m4. (Reading database ... 202932 files and director...
1068 days ago
- Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/$ sudo apt install jellyfish Reading pac...Selecting previously unselected package libjellyfish-2.0-2:amd64. (Reading database ... 329798 files and director...
995 days ago
