MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed. The MMseqs2 user guide is available as Github W...2235 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
...-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including source code, documentation and a user's guide are available at: http:/...2182 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for lon...2168 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyond this course, youmay...wn research or for editing existingR packages to suit your needs. This guide contains three different sets...1537 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
...get started using Bokeh to make your visualizations, see the User Guide. To see examples of how you...e Gallery. A complete API reference of Bokeh is at Reference Guide. If you are interested in co...2094 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier...1985 days ago
BLAST options, setting and defaults
...be useful for motif searching, is FASTA. To search nonplant datasets, try NCGR BLAST or NCBI BLAST. A fairly complete on-line guide to BLAST searching can be fou...1972 days ago
Genome Annotation using MAKER tutorial !
...ribe a de novo genome annotation for Boa constrictor in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.1962 days ago
1544 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the...1545 days ago