Results for "Guided"
Blogs
...(** note: experimental parameter **, this functionality continues to be under development) # # --genome_guided_bam :genome guided mode, provide path to coordin...2143 days ago
Bioinformatics tools for telomere to telomere assembly !
...h construction (Anton Bankevich @AntonBankevich)● uLTRA – tool for splice alignment of long transcriptomic reads to a genome, guided by a database of exon annotat...1002 days ago
Bookmarks
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...a novel method that aims to improve de novo assembly in the presence of a closely related reference. The idea is to combine de novo and reference-guided assembly in order to obtain e...2704 days ago
- ...urce code and executables for AMOS-Hybrid are available here: AMOS-Hybrid v1.0 (142 MB tar.gz file). Assembly and sequence-composition guided finishingContigs from a shotg...
2552 days ago
- +15 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...ds. SeqCons 1.0 – de novo and reference-guided Sequence Assembly SeqCon...lgorithm can be used for de novo and reference-guided sequence assembly. SimAssemb...raph – Secondary de novo Genome Assembly guided by closely related References...2696 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...GS FLX). Compatible with 454, Solexa and Sanger data. Linux OS required. SEQAN - A Consistency-based Consensus Algorithm for De Novo and Reference-guided Sequence Assembly of Short Re...3529 days ago
Software packages for next gen sequence analysis
...FLX). Compatible with 454, Solexa and Sanger data. Linux OS required. * SEQAN - A Consistency-based Consensus Algorithm for De Novo and Reference-guided Sequence Assembly of Short Re...3253 days ago
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Wire posts
News
Breaking chromosomes to study cancer !!!
...n of how and why chromosomal translocation occurs, which without doubt will allow new anti-cancer therapeutic strategies to be tackled. Using RNA-Guided Endonuclease (RGEN) technolog...3589 days ago
- A recent Nature Biotechnology paper from Chunyu Han’s lab, DNA-guided genome editing using the Natronobacterium gregoryi Argonaute, is a must-read for g...
2920 days ago
Opportunity posts
Associate Professor - Centre for Bioinformatics at Maharshi Dayanand University, Rohtak
...ntribution to educations innovation, design of new curricula and courses and technology-mediated teaching learning process with evidence of having guided doctoral candidates and resea...3807 days ago
Associate Professor - Bio-Informatics at University of Allahabad in Allahabad
...bution to educational innovation, design of new curricula and courses, and technology - mediated teaching learning process with evidence of having guided doctoral candidates and resea...3662 days ago
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Tags
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa --genome genome.fa --distanceLow distanceLow --...Tags: AlignGraph, algorithm, secondary, de novo, genome, assembly, guided, references
2220 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only considering those reads which should assemble together. Reducing/removing reference bias as compared to mapping...Tags: ARC, pipeline, facilitates, iterative, reference, guided, de novo, assemblies
2120 days ago
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Comments
Comment on "Structural variation: the hidden genomic treasure"
...ngement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on alignment-guided positional de Bruijn graph br...2713 days ago
Comment on "Software packages for next gen sequence analysis"
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data MaGuS (Map-GUided Scaffolding) is a scaffolder and a reference-free...2918 days ago
