Results for "HTSlib"
Bio-Scripts
Installing pb-assembly on Linux !
....0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1 HTSlib/1.3.1-foss-2016a...1.10.2-hc401514_2 conda-forge htslib: 1.7-0....10.2 hc401514_2 conda-forge htslib 1.7...2027 days ago
- ...t https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 --2018-10-25 13:...on=attachment%3B%20filename%3Dhtslib-1.9.tar.bz2&response-content-...tslib-1.9/cram/cram_encode.c htslib-1.9/cram/cram_encode.h htsli...ib-1.9/test/bgziptest.txt.gz htslib-1.9/test/bgziptest.txt.gz.gzi...
2012 days ago
Installing Platypus on Ubuntu !
...ibc-bin (2.27-3ubuntu1) ... ➜ htslib-1.9 git:(master) ✗ make insta.../local/include /usr/local/include/htslib /usr/local/lib /usr/local/sha...nning build_ext skipping 'cython/htslibWrapper.c' Cython extension (u...----------|----------------- htslib-1.9 | h...2011 days ago
Setting up falconUnzip conda environments for genome assembly !
...h5py: 2.8.0-py27h7eb728f_3 conda-forge hdf5: 1.10.2-hc401514_2 conda-forge htslib: 1.7-0...1982 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
...ll liblzma-dev cd /usr/bin wget https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 tar -vxjf htslib...PATH="$PATH:/usr/bin/samtools-1.9" export PATH="$PATH:/usr/bin/htslib-1.9" source ~/.profile ec...1550 days ago
Bash command to install bwa, samtools, picard !
...curl-7.67.0 | hbc83047_0 145 KB htslib-1.9 | h...1-0 curl pkgs/main/linux-64::curl-7.67.0-hbc83047_0 htslib bioconda/linux-64...1548 days ago
Correct bash command to zip your vcf file
bgzip -c file.vcf > file.vcf.gz tabix -p vcf file.vcf.gz #More at http://www.htslib.org/doc/tabix.html1516 days ago
