Results for "IT TAKES TYM"
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Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from...resented graphically through phylogenetic trees. Due to the fact that evolution tak...3959 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framewor...environment R http://linum.cofc.edu/software.html#metasimRNA Seq Simulator RSS tak...3750 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings...e discovered must satisfy. Documentation BCRANK BCRANK is a method that tak...3638 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-...inux server Easy to use point-and-click interface Takes NGS data (.fastq, BAM, SAM),...nd mapping errors, last update January 2013 Input: tak...2922 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quali...for assisted assembly using multiple references. It takes a short read assembly (a set...dger is a new de novo transcriptome assembler which tak...2699 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was u...s also a “pipeline” of tools that can be switched on or off. SPAdes tak...
2364 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edi...p;is a pure perl implementation of the same interface. String::Similarity tak...2354 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED datab...;provides detailed annotation and pathway analysis. Takes several hours per genome but...kka – Standalone command line tool, tak...2345 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in th...2343 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors fo...ve 500 million lines in the dataset it takes more than a day to iterate th...does is it creates a child process and takes the variables and code with i...ter scientist so forgive me for any mistak...2093 days ago
