Computer simulation of genetic mechanism !!
...An R package for the Monte Carlo simulation of sequence evolution http://www.ebi.ac.uk/goldman-srv/phylosim/ pIRS Profile-based Illumina pair-end reads simulator http...2978 days ago
Structural variation: the hidden genomic treasure
...end mapping Link TIGER, transduction inference in germline genomes using short read data Link MANTA https://github.com/Illumina/manta SV-Bay https://gi...2705 days ago
Illuminating next generation sequencing data with Go
Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of Adelaide3911 days ago
Next Generation Sequencing (NGS) Tutorials
...ection Introductory tutorial https://docs.google.com/document/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI Microbial de novo Assembly for Illumina Data Introductory tutorial ht...3490 days ago
Bioinformatics approach to Boar Taint
...int levels. Resequencing of a total of 47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average...3792 days ago
Genome Assembly Tools and Software - PART2 !!
...potential with multi-library Illumina-based projects. GeneStitch 1...or assembling and scaffolding Illumina sequencing data of microbial...s in any draft assembly using Illumina paired end reads. IMAGE is be..., trace data (ABI, SCF, AB1), Illumina and Roche 454 flowgrams into...2688 days ago
List of pharmacogenomics companies worldwide
...www.tmdlab.com www.transgenomic.com www.twt.com www.uslabs.net www.variagenics.com Great Equipment Companies for Genomics www.affymetrix.com www.illumina.com www.iontorrent.com www.se...3925 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
..., 2010. PubMedCentral Biases in Illumina transcriptome sequencing caus...mizing PCR amplification bias in Illumina sequencing libraries. Aird et...t-a-glance quality assessment of Illumina second-generation sequencing...y with barcoding to allow use of Illumina sequencing to screen for retr...3782 days ago
High Density Sheep SNP Genotyping Chip released!!!
...good news for you. FarmIQ in conjunction with Illumina and the International Sheep G...ing reduced representation libraries with the Illumina Genome Analyzer IIx. A set of...draft ovine genome. Read more @ http://res.illumina.com/documents/products/datash...3899 days ago
Illumina reveals first dataset of long reads
...the help of Moleculo technology , acquired by Illumina releases new service for long...lications on long reads and more: http://www.illumina.com/services/long-read-sequencing-service.ilmn http://blog.basespace.illumina.com/2013/07/22/first-data-set...3911 days ago
Research Fellow @ Mendel laboratory
...100 researchers who focus on genetics. The Center is equipped with state of the art genomics technology (SOLiD 5500XL next generation sequencer, Illumina MiSeq, Affymetrix/Agilent mic...3816 days ago
Assistant Professor @ King Saud University Riyadh
...analytical support for next generation sequencing data analysis – Exome-sequencing, Targetted sequencing as well as high-throughput genotyping on Illumina platform. Job location:...3729 days ago
3561 days ago
The Future of Personalized Medicine
Howard Jacob speaking on Personalize Medicine at the Illumina Meeting in Feb. of 2013.3744 days ago
2078 days ago
Generate simulated polyploid genome !
...> toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent.fasta #generated 50X of Illumina paired-end reads sim_reads...2056 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a large number of short DNA sequences and placing them back together to create a reflection of the original chromosomes from which the DNA...Tags: Protocol, De novo, Genome, Assembly, Illumina, Reads
1207 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iVar; amplicon data only) Duplicate read marking (p...Tags: assembly, pipeline, genome, illumina
880 days ago
418 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Na...423 days ago