435 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Na...441 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very im...603 days ago
Comment on "Coronavirus Resources !"
Illumina toolkit for SARS-CoV2 https://sapac.illumina.com/informatics/biological-interpretation/coronavirus-software.html#about981 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabili...1162 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://news.bloomberglaw.com/ip-law/illumina-hits-rival-bgi-with-new-dna-sequencing-patent-lawsuit1547 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://www.genomeweb.com/sequencing/illumina-sues-bgi-again-alleging-new-coolmps-chemistry-infringes-sbs-patents#.XlpFFJNKg0o1547 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://xconomy.com/san-diego/2019/12/18/ftc-challenges-pacbio-acquisition-says-illumina-is-a-monopolist/1547 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
good news after long time. Illumina monoploy will end soon.1547 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...rror rate of mismatch within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden. [null] (Illumina Moleculo) pacbio (PacBio SMRT...2143 days ago