Results for "Image data analysis"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules...n use "yum" for the rescue. Dont worry biological data cruncher, this is true we are...e scanning (atstart or never)? [atstart]Cache metadata (ye...3953 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of softwar..., scripts, and tools to analyse gigantic biological data. Being a great biological pro...ver getting a solution. Learn to perform root cause analysis, learn enough about the under...3953 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3948 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understan...e background of software/tool to better explain the data com...
3948 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We...3956 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha heli...ire topology for 77% of the sequences in a standard dataset of 86 proteins with superv...atlab Conclusion/Implementation: Here discriminant data min...3948 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used...st to Bio-informatics work that is math heavy and deals with a large amount of data.3955 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing...rised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3816 days ago
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Pages
Bio++ : C Language libraries for your biological need
...aries are as follows:Sequence analysis Sequence and Site object...and molecular evolution Data structure and IO Phylogenetic tr...Function objects).Statistics: DataTable object, with I/O from CSV fi...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3951 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinf...Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF)...3950 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the m...growing HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformati...
3951 days ago
- ...collection, organization and analysis of large amounts of biological data, using networks of computers and databases." - from the glossary fo...of protein domains. Combined analysis of structural and genomic data will certainly get more important...
3950 days ago
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Wire posts
News
- "In recently published paper (entitled "Microbial Production of Short-chain Alkanes") in Na...htm Paper: http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12536.html Image so...
3873 days ago
- InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante. http://www.interpretomics.co/
3923 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosyste...yze Next Generation Sequencing (NGS) data analysis. In the context of a flag...der to ensure compliance of produced datasets with pipelines requiremen...onal facilities and expertise in NGS data analysis, and will benefit as well fro...3952 days ago
- van Noort Group is looking for PhD...produce large amounts of raw data that can be transformed into...growing amount of biological data becoming available and turn b...on a combination of published data. An important part of the gen...th high throughput sequencing analysis methods, machine learning, pr...
3952 days ago
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ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our long-term research ob...with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3952 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical geneti...pedigrees Investigation of DNA sharing in distantly related individuals CNV analysis in pedigrees and connections...
3951 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this...Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database...3922 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the b...mes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! T...3723 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Cen...ry: Making Sense out of Massive Data Air date: Wednesday...rease in genomic and biomedical data, which will soon outstrip adv...r to perform current methods of analysis. Extracting new science from these massive datasets will require not only faster...3905 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome...Bacillus subtilis. Until now, genome analysis could only be done in nat...sequencer development has made genome analysis possible in an ordinary lab....y understanding their personal genome data. So, I think it's amply possible...3920 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1220 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has...ad().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/all...1139 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a pr...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3534 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3529 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinfor...ome, proteome, and metabolome analysis to reveal the molecular p...seful tools for comprehensive analysis and comparison of high-throughput experimental data in an integrated manner and besid...With the increasing amount of data in databases, there is already a...2365 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It...3906 days ago
R is a free software programming langu...ely used among statisticians and data miners for developing statistical software and data analysis. R's popularity has incre...conductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statisti...3954 days ago
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Tags
- The Rolland-Lagan lab at the University of Ottawa is specializing in computational and developmental biology. We use a combination of experimental work, microscopy, image analysis and computer simulations to explore developmental mechanisms in two and three dimensions. Research Area Develo...
Tags: Developmental biology, Computational biology, Simulation modeling, Image data analysis, Canada
3951 days ago
Comments
Comment on "R and Bioconductor Tutorial"
There are several R packages to use image data for statistical analysis and modeling EBImage http://master.bioconductor.o...ials/2010/CSAMA10/100617-pau-brixen-ebimage-2.pdf http://www.bioconduct...org/packages/release/bioc/vignettes/EBImage/inst/doc/EBImage-introduction.pd...3531 days ago
