Results for "In partaical working"
Bio-Scripts
my @ids =qw (scaffold_4 scaffold_4 scaffold_15 scaffold_40 scaffold_44 scaffold_51...caffold_480 scaffold_521 scaffold_644); foreach my $i (@ids) { print "Working on $i\n"; mkdir $i; sys...2482 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data:...returns a whole new population array reference # from this point on, we are working with a new generation in $pop...2388 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input arguments is lower than...,$r; __END__ To test the program, save this two files in your current working directory: exon.fa and intron...2171 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2157 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...]...l reads OUTPUT -O|--outdir Output directory, default is working...
2143 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for d...or sprintf............done. auto::isreg - Does your C library have a working S_ISREG..........yes. auto::...1553 days ago
Resume the MIRA assembler run !
mira -r manifest_file Usage: mira [options] manifest_file [manifest_file ...] Options: -c / --cwd= directory Change working directory -r / --resume...1751 days ago
- ➜ Tools git:(master) ✗ git clone https://github.com/Nextomics/nextsv.git...4.0 -- The CXX compiler identification is GNU 5.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- wo...
2115 days ago
- # Reset Color_Off='\033[0m' # Text Reset # Regular Colors Black='\033[0;30m'...0;106m' # Cyan On_IWhite='\033[0;107m' # White #Usage echo "${Green}Working on test${Reset}"
2035 days ago
Bash script to alignment of short reads against reference genome !
bwa mem -t 40 -R '@RG\tID:K12\tSM:K12' \ E.coli_K12_MG1655.fa SRR1770413_1.fastq.g...nimap2.bam #The only major change from bwa mem is that we'll tell it we're working with short read data using -a...1576 days ago
