How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies. In...oneBuilding dependency tree Reading state informa...3961 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by tra...terms in a list of microarray probe sets or gene identifiers (with expression informa...3721 days ago
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3908 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the dev...fer which part of the model architecture are important to capture the informa...3956 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3879 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes...Vector tools: element-wise functions, statistics (mean, var, sd, correlation, informa...3959 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database...informatics Center) and the Open Bio Foundation. The project was supported by Informa...3958 days ago
3959 days ago
3958 days ago
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of...ials created by Sofia Robb of the University of California Riverside. Further informa...3962 days ago
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3960 days ago
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers Unive...nology and the University of Gothenburg (for more information see http://www.chalmers.se/ma...gy, infectious diseases and cancer genomics. More informa...3959 days ago
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM)
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM) is committed to shortening the process of obtaining novel discoveries to achieve distinctive...3959 days ago
3907 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode al...computers and techniques from information science are not just used as...ganisms, DNA contains genetic information, and this is called the genom...we do is utilize those genome information to investigate the principles...3928 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the outp...tate University. Delivered live at the Tomato Disease Workshop 2010. For more informa...3908 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Es...2927 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU Ge...ct; use warnings; use Bio::SearchIO; # Usage information die "Usage: $0 \n", if (@A..._end\tpositives\tidentical\n"; # extraction of informa...2925 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and...tapred2cs.ibers.aber.ac.uk/ and for more detailed information about the system the articles...te the manipulated data and reach to clean/useful informa...2373 days ago
3715 days ago
CIAB Recruits Scientist, Engineer, Informatics Officer
Center of Innovative and Applied Bioprocessing (CIAB) - Punjab Center of Innovative and Applied Bioprocessing (CIAB) invites applications to recruit on vacant posts of Scientist, Associate Plant Manager/ Plant Engineer, Informatics Officer. Applications against these Government Jobs can be sub...Tags: Bioinformatics, Computational biology, Structural Bioinformatics, Biology, Information Officer, CIAB, Punjab, India
3092 days ago