2031 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
...into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you...om/chriskiehl/Gooey.git run setup.py python setup.py install1646 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
...n package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda install -c bioconda -c conda-forge ch...1503 days ago
tinycov: standalone command line utility written in python to plot coverage from a BAM file
...thon to plot the coverage of a BAM file quickly. This software was inspired by Matt Edwards' genome coverage plotter. To install the stable version: pip3 install --user tinycov To install th...1503 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
...re fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the package, we provided a compiled bwa, so the user needn't to install bwa. LR_Gapcloser uses the al...1450 days ago
gggenes: a ggplot2 extension for drawing gene arrow maps.
Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes1431 days ago
1373 days ago
chromatiblock: Scalable, whole-genome visualisation of structural changes in prokaryotes
To create a fresh environment for chromatiblock to run in do: conda create --name chromatiblock conda activate chromatiblock conda install chromatiblock --channel conda-forge --cha...1349 days ago
Platypus – R package for object detection and image segmentation.
...-class object detection using YOLOv3 architecture You can install the latest version of platypus with remotes package: remotes::install_github("maju116/platypus")...1272 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
...t handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more. Run pip install luigi to install the latest stable version fro...1045 days ago