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Bio-Scripts

• • Jit@jit.aber

  

  Install prokka using conda !

  ...nstall -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment:...solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodat...

  1218 days ago

• • Jit@jit.aber

  

  Install seqtk using conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1218 days ago

• • Jit@jit.aber

  

  Install bwa using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1218 days ago

• • Jit@jit.aber

  

  Install asciigenome using conda !

  (JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.

  1218 days ago

• • Jit@jit.aber

  

  Install krona using conda !

  (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?

  1217 days ago

• • Jit@jit.aber

  

  Install maxbin2 using conda !

  ...stall -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment:...solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodat...

  1217 days ago

• • Jit@jit.aber

  

  Install gffread using Conda !

  ...//github.com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$ conda install -c bioconda gffread Collecting package metadata (current_repodata.json): done Solving environment:...

  1206 days ago

• • BioStar@biostar

  

  Set up WGD environment using conda !

  ...onda create -n wgd python=3.7 blast mcl muscle mafft prank paml fasttree cmake libpng mpi=1.0=mpich Collecting package metadata (current_repodata.json): done Solving environment:...

  1207 days ago

• • Neelam Jha@neelam

  

  Conda command to install checkV

  (mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Collecting package metadata (current_repodata.json): done Solving environment: done ## Package...

  638 days ago

• • Jit@jit.aber

  

  Install ragout with conda !

  ...nstall -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment:...solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodat...

  1151 days ago

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