FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in sequencing data and predi...1559 days ago
Musket - a multistage k-mer spectrum based corrector
...ell-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introdu...1551 days ago
1416 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently...1401 days ago
Kmer: a suite of tools for DNA sequence analysis
...i-fasta files. In addition to providing random access to the base level, it includes several analysis functions. Meryl: An out-of-core k-mer counter. The amount of sequen...991 days ago
991 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work,...time thinking about how to store k-mer graphs efficiently, disc...we've been enthused about using k-mer based similarity measures&nbs...'t spent too much talking about using k-mers for taxonomy, although that...982 days ago
876 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only...of a FASTA file consisting of many contigs, and extract unique k-mers for each contig. The output...870 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and g...ssembly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, in...762 days ago