2034 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MA...1957 days ago
1939 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be gui...ol, through to building contigs and analysis of the results. At the end of the lab you will know: How to perf...1927 days ago
OMTools: a software package for visualizing and processing optical mapping data
...cessing and simulation. These modules together form an accessible and convenient pipeline for optical mapping analyses. https://github.com/TF-Chan-Lab/OMTools1859 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optiona...1420 days ago
Machine learning training and courses in bioinformatics !
...only be covered briefly. More at http://homes.sice.indiana.edu/yye/lab/teaching/spring2017-I529/ Mo...et.missouri.edu/cheng_courses/mlbioinfo/mlbioinfo.htm http://www.raetschlab.org/lectures/MLBioinformatics...1581 days ago
1548 days ago
3D de novo assembly (3D DNA) pipeline
...tegrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the origin...rge section see https://github.com/theaidenlab/AGWG-merge.1548 days ago
1543 days ago