2054 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MA...1977 days ago
1959 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be gui...ol, through to building contigs and analysis of the results. At the end of the lab you will know: How to perf...1947 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle...d convenient pipeline for optical mapping analyses. https://github.com/TF-Chan-Lab/OMTools1878 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optiona...1440 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzi...fly. More at http://homes.sice.indiana.edu/yye/lab/teaching/spring2017-I529/ Mo...g_courses/mlbioinfo/mlbioinfo.htm http://www.raetschlab.org/lectures/MLBioinformatics...1601 days ago
1568 days ago
3D de novo assembly (3D DNA) pipeline
For a detailed description of the pipeline an...with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the origin...on see https://github.com/theaidenlab/AGWG-merge.1568 days ago
1563 days ago