Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that m...le: Wageningen Bioinformatics Webportal EMBOSS explorer Mobyle@Pasteur Soaplab2 Web Services at Vital-IT...2225 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take...SWAP-Assembler 2 – A scalable and fully parallelized Geno...e present SWAP-Assembler, a scalable and fully parallelized geno...-Assembler 20160120 – Scalable and Accurate Targeted Gene...herSC is a repeat-aware and scalable tool for upgrading de-novo...2700 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance...Software (C++) https://pachterlab.github.io/kallisto/ Sailfish... k-mers) https://combine-lab.github.io/salmon/ RNA-Skim...LMAT Assignment of taxonomic labels to reads by k-mers se...e (Java) https://github.com/ctlab/metafast...2385 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 0...ll RNA-seq analysis software https://github.com/diazlab/SCell Beta-Poisson model for...evelopmental-cell/fulltext/S1534-5807(16)30682-7 Scalable latent-factor models applie...2365 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload conti...nal databases and is not currently available for download or use outside...with unknown functions. BEACON is available under GNU General Public Li...e overhead of a database. MAKER is available for download and can be tes...2345 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evoluti...finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Struc.html LTR_MIN....repeatmasker.org/ RepeatRunner http://www.yandell-lab.org/repeat_runner/index.html...2288 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...n synthesis in eubacteria and has experience working in CAP and NABL accredited lab validating and interpreting N...2278 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-...864 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspe...2216 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads,...situations. Take a look at the PRICE software from the DeRisi lab. Its meant to do something very similar. http://derisilab.ucsf.edu/index.php?page=softw...2179 days ago