OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...similarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demon...1984 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...rsion of SiLiX, based on MPI, is also available in this package and has been proved to be scalable, so that its allows the study of very large datasets. SiLiX is already i...1984 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to ma...the latest release). Run QUAST as usual and do not forget to add ‐‐large option to your command!...1974 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an...1941 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visualization (OM...1877 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
..., such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. T...1872 days ago
HumCFS: a database of fragile sites in human chromosomes
...ve been recognized as a preferential site for integration of exogenous oncogenic DNA viruses and hotspots for chromosomal re-arrangement. There is large gap in our knowledge of human...1853 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs1792 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
..., such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. T...1778 days ago
1727 days ago