Results for "Lateral gene transfer PLOS"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses...Scope Fusion transcript prediction using gene k-mers profiles of the R...Detection of mutations in targeted third-generati...uster Clustering of reads from different gene...2365 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’...e expression level for each gene across a large population of...fficient for studying heterogeneous systems, e.g. early d...ngle-Cell Resolution of Temporal Gene Exp...Finder: Identify ordering effect gene...2345 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysi...lity control, read alignment, quantification of gene and transcript levels, visualization, differential gene exp...-2-3 with limma, Glimma and edgeR Differential gene...
2345 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the...hat includes prediction of protein-coding genes, as well as other functional...structural RNAs, tRNAs, small RNAs, pseudogenes, c...ively, against a nonredundant set of KEGG GENE...2326 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically ana...ttps://github.com/juliemkauffman/DyCoNet GENeVis Network and pathway visualization http://tinyurl.com/genevis/...oup/sysfys/software/rematch/ SNOW Gene...2282 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists...expression analysis, Splicing events and gene fusion detection. Strand NGS...el discovery like identification of novel genes, e...ntextualization on the set of interesting gene...2258 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms&r...for a eukaryotic species to gain a gene by HGT, foreign DNA must ente...ve selection, despite potential for genetic incompatibility.../ download 22355228 Gene...844 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioi...nanoporetech/ont-assembly-polish Generade-nl/TULIP: TULIP - The Unc...ion Pipeline https://github.com/Generade-nl/TULIP www.nature.com...imization platform for synthetic gene des...186/1471-2105-15-211 Palindromic gene...2236 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrectio...the synthesis of an ancestral gene and expression of the co...er variety of and much more ancient genes.&n...p; 2- Your dataset has a good phylogene...2173 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfm...art send evalue bitscore 1. qseqid query (e.g., gene...2133 days ago
