Results for "Length"
Comments
Comment on "Short-read assembly using Spades !"
...s using a text editor or a genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction....433 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
...are simulating datasets. The coverage equation is defined as follows. C = LN / G C is the sequencing coverage G is the length of the genome L is the read length N is the number of reads...595 days ago
Comment on "Sibelia: A comparative genomics tool"
...4. End -- one-based index of the last base pair of the instance 5. Length -- length of the instance of the synten...stage has two parameters, K and D. Let's call K-mer a substring of length K. At each stage "Sibelia" c...1297 days ago
- ...les by default: abundances.h5 is a HDF5 binary file containing run info, abundance esimates, bootstrap estimates, and transcript length information length. This file can be read in by&...
1373 days ago
Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore"
...onaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)|52.216.106.124|:443... connected.HTTP request sent, awaiting response... 200 OKLength: 2548600 (2.4M) [application/...1565 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...threads. [1] -l --seed-len [INT] Length of seeding fragments. [50] -i...V --SV-len [INT] Expected maximum length of SV. [10000] -v --ovlp-rat...R --max-reg [INT] Maximum allowed length of unaligned read part to tri...4] -d --diff-rate [FLOAT] Maximum length difference ratio between read...2134 days ago
- ....gz] --ql <value>, --queryList <value> a file containing list of query files, one per line -s <value>, --segLength <value> mapping segment length [default : 5,000] sequences s...
2134 days ago
- ...ta for raw data, alignment, and variant calling. qrqc qrqc. Quickly scans reads and gathers statistics on base and quality frequencies, read length, and frequent sequences. Prod...
2149 days ago
Comment on "Basic command-line to run BLAST"
...V ... done. ==> RETR protein.fa.gz ... done.Length: 12021576 (11M) (unauthoritat....HTTP request sent, awaiting response... 200 OKLength: 11437049 (11M) [application/...V ... done. ==> RETR protein.fa.gz ... done.Length: 10463933 (10,0M) (unauthorit...2256 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...is shorter than this, it will be marked as unmapped. This value can be lowered if the reads are known to be accurate. [80] --minimizer-window INT Length of the window to select a min...2304 days ago
