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Results for "Length"

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• • Anjana@anjana

  

  Quick way to calculate length of multiple fasta file!!

  I am using this perl code right nowadays.#!/usr/bin/perl use warnings; use strict;open(FASTA, "<", seq.fa) or die("Can't open\n"); my %singleLineSequences; my $sequence_id; while(){ my $line = $_; chomp($line); if ($line =~ m/^>(\S+)/){ $sequence_id = $1; $s...

  Tags: Fasta, Size, Length, NGS, Sequence

  2863 days ago

• • Shruti Paniwala@shruti

  

  Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner

  Tags: Length, Linux, OneLiner

  2656 days ago

• • Aaryan Lokwani@aaryan

  

  Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

  Tags: Fasta, Index, Length, Count, Size, Samtools

  2141 days ago

• • Neelam Jha@neelam

  

  How to Calculate Illumina Read Length ?

  Hi, I wanted to know how to calculate illumina read length 

  Tags: How, Calculate, Illumina, Read, Length

  1543 days ago

• • Rahul Nayak@rahul

  

  Fold the FASTA sequences with length $ fold -w 100 genome.fa #Fasta #Genome #Fold #Break #Length

  Tags: Fasta, Genome, Fold, Break, Length

  832 days ago

• • Radha Agarkar@radhaagarkar

  

  Unable to index fasta file with samtools !

  I am unable to index fasta file with samtools ! It return "different line length in sequence" error message . How to fix it?  nc@radha[Downloads] samtools faidx dedup.genome.scf.fasta_assembly.fna [][fai_build_core] different line length in sequence 'jcf7180000001219'.Could not build fai in...

  Tags: samtools, faidx, index, length, sequence

  2248 days ago