3945 days ago
BBTools for bioinformatician !
...CTTG Note: For BBMerge with micro-RNA, you need to add the flag mininsert=17. The default is 35, which is too long for micro-RNA libraries. Identifying adapter...2276 days ago
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3003 days ago
Bio++ : C Language libraries for your biological need
...r you. Bio++ 1.9.0 is available with amazing libraries that can help you to solve ap...logical programmers are ready to use the C++ libraries of biology. These library are...from a file or command lineetc. Some of the libraries are under development that wi...3953 days ago
Genome Assembly Tools and Software - PART2 !!
...used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate ins...2691 days ago
3953 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nalyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Aird et al, Genome Biology 1...5, 2009 PubMedCentral Cost-effective, high-throughput DNA sequencing libraries for multiplexed target captur...3784 days ago
High Density Sheep SNP Genotyping Chip released!!!
...that target single nucleotide polymorphisms (SNPs). More than 18,000 of these markers were discovered through sequencing reduced representation libraries with the Illumina Genome Anal...3902 days ago
2376 days ago
Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
...I MUMBAI – 410210 No. ACTREC/Advt./ 72 /2013 WALK IN INTERVIEW 1. JRF* Genome-wide RNAi screen with human pooled tyrosine kinase shRNA libraries in head and neck squamous cal...3847 days ago
Internship in Computational Biology
...ripting language (Perl, Python...), a basic knowledge of MySQL or any relational database management system. Knowledge in biological programming libraries (BioPython, BioPerl, BioRuby....3536 days ago
2149 days ago
Install Parrot Virtual Machine !
...done. init::optimize - Enable optimization..................................no. inter::shlibs - Determine flags for building shared libraries.....-fPIC. inter::libparrot...1542 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3531 days ago
Leaflet: JavaScript libraries for interactive maps
Leaflet is one of the most popular open-source JavaScript libraries for interactive maps. Features Interactive panning/zooming Compose maps using arbitrary combinations of: Map tiles Markers Polygons Lines Popups GeoJSON Create maps right from the R console or RStudio Embe...Tags: Leaflet, JavaScript, libraries, interactive, maps
1551 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiTags: JCVI, Python, utility, libraries, genome, assembly, annotation, comparative, genomics, synteny, plots
1515 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...a list of all “perfect” reads. This is reads that have a perfect map to the reference. Reapr is finicky though, and can’t use libraries with different read lengths,...1342 days ago
2524 days ago