Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo: https://vgteam.github.io/sequenceTubeMap/1529 days ago
SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:1555 days ago
1212 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
...constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that already had a potential link based on overlaps, it yields...1197 days ago
263 days ago
ExRec: Exclusion of Recombined DNA
...tter meet the no-recombination assumption in coalescent-based analyses. Link to the article: https://...oup.com/bioinformaticsadvances/article/3/1/vbad174/7455250?searchresult=1Link to the software:https://githu...52 days ago