BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a very fast se...1969 days ago
GenomeView: genome browser and annotation editor
...editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loa...1947 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String G...1927 days ago
1926 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
...line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you can install Gooey by cloning the project to your local directory git clone https://...1644 days ago
1591 days ago
modelStudio: a package automates the explanation of machine learning predictive models
...el explanations in the form of a serverless HTML site. It combines R with D3.js to produce plots and descriptions for various local and global explanations. Tool...1561 days ago
Glia: a Graph/Smith-Waterman (partial order) aligner/realigner
glia's main use is as a local realigner. It will realign reads to a set of known (or putative) variants in a VCF, both consuming and producing an ordered stream of BAM alignments....1556 days ago
1551 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
...a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or public servers to provide...1546 days ago