Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl...d perl version of John Gruber's original Markdown --- No longer und...SailAlign is an open-source software toolkit for robust long...2489 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which s...2462 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment...y (fully resolved chromosome arms) from third-generation long and n...a) https://github.com/marbl/MHAP Miniasm Assembler of long...2371 days ago
2351 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED datab...in-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, con...2332 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It take...2330 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently...s in current directory ls -l — list items in current directory and show in long...2280 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatic...anoporetech.com/taxonomy/term/131 De novo long-read assembly of a complex an...enerade-nl/TULIP: TULIP - The Uncorrected Long read...s https://github.com/lh3/minimap2 SSPACE-Long...2241 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in ...for int... yeschecking size of int... 4checking for long... yeschecking size of long... 8c...e ‘int’, but argument 3 has type ‘long...2218 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A...2203 days ago