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jobTree based python wrapper to run the genome simulation tool suite Evolver
...s of a completed simulation; extract pairwise multiple alignment files (.maf) from leaf and branch nodes from a completed simulation and with the help of mafJoin, join them together into...2331 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
...ted into an interactive plot written with d3.js library. D-Genies also allows to display dot plots from other aligners by uploading their PAF or MAF alignment file. http://dge...2147 days ago
maftools : Summarize, Analyze and Visualize MAF Files
...Genomics, Mutation Annotation Format (MAF) is being widely accepted and...s to summarize, analyze, annotate and visualize MAF files in an efficient manner...any in-house studies as long as the data is in MAF format....1221 days ago
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862 days ago
CrossMap: program for genome coordinates conversion between different assemblies
...h37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.822 days ago