Genome Assembly Tools and Software - PART1 !!
...SPAdes 3.6.2 – Single-cell Genome Assembler SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. PE...2689 days ago
Awesome perl frameworks, libraries and software - PART 1
...ger under active development since MMD 3 PerlDancer/Dancer - T...t with publishing a web site using MMD and a few perl scripts rcapu...rl语言编写的webqq客户端框架(非GUI),支持旧版webqq的多重md5带盐登录密码算法以及新版smartqq的md5+rsa+t...p;- A Perl port of Webmachine willemdh/check_netapp_ontap -&nb...2492 days ago
2354 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several h...2335 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and out...2333 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages—the precursor to modern web applications—were easy to create with Perl and CGI. Thanks to Perl's...2325 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...ners. File System ls — list items in current directory ls -l — list items in current dir...ursively cp file1 file2 — copy file1 to file2 cp -r...ectory space usage free — show memory and swap usag...n for domain dig domain — get DNS information for d...2284 days ago
Computational resources for TE discovery and TE detection
...PILER http://www.drive5.com/piler/ PLOTREP http://repeats.abc.hu/cgi-bin/plotrep.pl RepBase http://www.girinst.org/ RepeatFinder http://cbcb.umd.edu/software/RepeatFinder/...2277 days ago
Some useful Bioinformatics links
...14-04-lts-64-bit-version lh3/fermi: A WGS de novo assembler based on the FMD-index for large genomes http...gorithms_dot-plots%26Itemid%3D76 RepeatFinder Home Page http://www.cbcb.umd.edu/software/RepeatFinder/ Re...2245 days ago
Installing Bio::SCF perl module
...I../utils -I/usr/local/include -fPIC -MT Read.o -MD -MP -MF ".deps/Read.Tpo" -c -...ils -I/usr/local/include -fPIC -MT scf_extras.o -MD -MP -MF ".deps/scf_extras.Tpo.../utils -I/usr/local/include -fPIC -MT strings.o -MD -MP -MF ".deps/strings.Tpo" -...2221 days ago